NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307478_10000010

Scaffold Ga0307478_10000010


Overview

Basic Information
Taxon OID3300031823 Open in IMG/M
Scaffold IDGa0307478_10000010 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)302655
Total Scaffold Genes267 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)223 (83.52%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004190Metagenome / Metatranscriptome449Y
F009363Metagenome / Metatranscriptome319Y
F012154Metagenome / Metatranscriptome283Y
F023203Metagenome / Metatranscriptome211Y
F073174Metagenome / Metatranscriptome120Y
F092397Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0307478_10000010104F073174GGAGMSYKRGRRENPEVLAVVPLPNGEERRRREIMLARVMLVAIDLILAGEPLGLKTARDLFHEVRHTYPELVDEFL
Ga0307478_10000010165F004190GAGGMFYQLSWTTLPGLRGLSCSEFRAVATALPDTERGIAIECESEAERDALLAELESHFGPQRFLNTAAAFDAVKDYVVLRTARRS
Ga0307478_1000001048F009363AGGGGGMAARMCPRCKTEIPAPEVASRSNDALCPKCGARLEVTSGARTISSICGLAVAAIVWRLSSGSSTDLGGVLPTVYAFLAFGIVSPLVLMFVANLQNALEVPVAEPAHARSSAGHGSAGGHGGGHH
Ga0307478_1000001053F092397AGGAGMKITGLTLQICAVGMLIFSAAVMAQDADKQKLIEIEKSFAANPTNGPESAALGKQYFYDGNLVQLTGIGRVGTLPKTRVLEIISKPDPSDPDVKSSQAMSDLRVELYGDAALVSYKLTNTDTGHKDAALNVTDHYGCLDTFVKQKGQWFLVGDACSYETPVSKAKMDAIKKAMAQAPKDVQQAYH
Ga0307478_1000001063F023203AGGAGGMFGFKKNPKNSVPRPSLYCVWIRAHEGEDAPLIRVWIDPSMTMFESQATVHQPDLEAARAQMEAALSGRSES
Ga0307478_1000001072F012154GGAGMVDEKRAAALLGLAILELRWLSRMLGLGQRQESGNASQIVFTYEELKRLSSAAASSTK
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