Scaffold Ga0307478_10000008

Overview

Basic Information

• Taxon OID: 3300031823
• Scaffold ID: Ga0307478_10000008
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 327255
• Total Scaffold Genes: 281
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 244 (86.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001432	Metagenome / Metatranscriptome	696	Y
F003814	Metagenome / Metatranscriptome	467	Y
F004215	Metagenome / Metatranscriptome	448	Y
F034385	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307478_10000008136	F004215	GGGGG	MILGLLLVFLAVVGVALLLRPWPFFLAPEEPHSYSERNVAVEFVKWVERQALARGLSVRGVARPVPLQCPKCGKSSNYFVYPDEVCERCWRASLKPASIPAKENHS
Ga0307478_10000008241	F001432	GGAG	MLKKEFIRDGTRRIIGSVTTGYSDTSAVVRDEGNRIAGRTNERFHTTRDSSGKLVSINSADPGLLIRKK
Ga0307478_10000008242	F034385	AGGAG	MCNIGKPLEILDVEPLSLPAPLRKEKEQPAEEPVTVEVPVAETETTAEPSLVEKS
Ga0307478_1000000837	F003814	GGAG	MIAAILFIVSVVAFGQFGLYYWRATISGIAAQAISDRIRVAAGITSAGVGAKDFGSIIILNDLSPDLRGPNGSFWGIRSYYCVVRSLGRIVPAMASWAETEMATCSRYAAVLMDQHLERNMACAAQARGM