Scaffold Ga0307473_10257009

Overview

Basic Information

• Taxon OID: 3300031820
• Scaffold ID: Ga0307473_10257009
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1075
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033637	Metagenome / Metatranscriptome	177	Y
F063442	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307473_102570091	F033637	GGGGG	MDHIEGSLRILRLSHETEPEPWTYEISFAPYAASSIPPACDVVGDDQLERALHYGLGLRDSHLDRSVQKARHDNLVIHHVRLTDELKTLLDDVV
Ga0307473_102570092	F063442	N/A	MRPLETEHQGWKVRVIAHPVGGAWSALVEVWPPGSADTAEARVVPFSATLSSEKLAQAAGRAAAVRWLDREAKRG