NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316037_106676

Scaffold Ga0316037_106676


Overview

Basic Information
Taxon OID3300031808 Open in IMG/M
Scaffold IDGa0316037_106676 Open in IMG/M
Source Dataset NameSpruce litter microbial communities from Bohemian Forest, Czech Republic ? CLE3 metaT (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)751
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0431Long. (o)13.617Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009335Metagenome / Metatranscriptome319Y
F030100Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0316037_1066761F009335GGAMVKTRIRNHKRVFTWFASRRPQTPAEASLEASLKIQRLQGAGRPCYEAGNSACRGEWRREAGSQC
Ga0316037_1066762F030100N/ARVESDARKRKQASGIIPGDWGKVGPGWLAQPLLEPVERPGGGGRIHQFLWRRSRAVSKREKGTERRETIRSRFEPGQVTQGSFGLE

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