Scaffold Ga0310124_10297230

Overview

Basic Information

• Taxon OID: 3300031804
• Scaffold ID: Ga0310124_10297230
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB11b_AW_Bot5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 977
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 79.9957
  • Long. (^o): -149.9767
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001606	Metagenome	664	N
F033390	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310124_102972301	F001606	GAGG	MTYGYDDVTTTSLGTGTAESQLNTATSLSAPDPAHAFLAVIPYQSESAAFTVDQSLLTAFRIQSDDVAVEPKKFVLPNVNTGDASFTSVSAPALLAYPINTPLAGGEHLNFYGQPLVANTVAPICGATVIYDTDSTNGAEQYYTRPTNETAGATAVDVRTEGGSMTIQGGNEITGLYTVVSGGVATASQHDVGYSEFLSPDFNTSMPYRVAIQPTYTGLGAAANAVTGGGGIMQYNMPRGKGIPLANNVT
Ga0310124_102972302	F033390	N/A	IDGMFNKWSGIGLGTLIYSMVPIKMLPHKGKAKTLGKSLLTGGILGGLFSVGNPHNTNLIAPSRAMTVSTSEVSYT