Scaffold Ga0310123_10289439

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0310123_10289439

Scaffold Ga0310123_10289439

Overview

Basic Information
Taxon OID	3300031802 Open in IMG/M
Scaffold ID	Ga0310123_10289439 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1080
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	74.6947	Long. (^o)	-146.6612	Alt. (m)		Depth (m)	800
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005524	Metagenome	398	Y
F024648	Metagenome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310123_102894394	F024648	GGAG	MRPGDYHLYVGDMFRTKNGLGLIVKKSGGHFHYSTVGDDQRKTCQTIETKRFYSYCDDMSHGQVLEVILLPNRKYRRKRK
Ga0310123_102894395	F005524	GAG	MDIGDKVQHFGTGSVGTIIDSSYEVETPFQQMCVQWEDDLAPHKDSWERRNDLSIVETPVYDFTISK

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