Scaffold Ga0310123_10129407

Overview

Basic Information

• Taxon OID: 3300031802
• Scaffold ID: Ga0310123_10129407
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1739
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED264 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001334	Metagenome / Metatranscriptome	720	Y
F003285	Metagenome / Metatranscriptome	496	Y
F061282	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310123_101294072	F003285	GAGG	MPDQESIHNLQTEIQTLKIKDEFRTKELDALMKKLSDTSSKLNALSENIGRLLAGQDLHKTSDNEVRDELKTLHIRIGDLHDKCTEMIDKTETRVSSDISLLYKKVDSLEKWRWITIGVATAIAWLLTNIIPKFLNN
Ga0310123_101294073	F001334	N/A	MMKFKEYLQLNADDSIEQVMNGEWITKSRTTWKATDDEDNKIEIHNDGHVPELNGESWSVHTNTFAPKAFAFFCKQFIKEVKPTEVIHARSRIYP
Ga0310123_101294074	F061282	N/A	GGNLAVRGIPLLKKPPKGLVMKRFGGIDVFAIDPTHFQKSRLGKKKYTRYSGYVGEDEAGEYIRAFARKYPKKPIIVMDSSTGCMQYLKHGS