Scaffold Ga0310121_10058943

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10058943
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2558
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013700	Metagenome	269	Y
F026709	Metagenome	197	N
F040683	Metagenome	161	Y
F058216	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_1005894312	F026709	N/A	MYIILIKDNHRYKLYTNEIFTTEKETLDYVERSKFKKNVKWKVEEFDSKYFRGGE
Ga0310121_100589432	F040683	GGAG	MKKYRVWGYEKQGYYTEVEANNKQDAHDKAMDVDRLDWEMGEDRLALFDIELKDIERIDN
Ga0310121_100589436	F013700	AGG	MNIDFKNLAYPFEDVGDAPFNVVRILNECYNDYSNGNLGGGERMAIGSIVRQEFLRRIVQLGYDELKFQDIADTIENDVDENNAHLVSKNYEPPETNEEDE
Ga0310121_100589439	F058216	AGGAGG	MNKTIGQLIKEDHWSTRRLAVSLNITEADLKGVKWEKSNKPYKKSKKKSYLW