Scaffold Ga0310121

Basic Information
Taxon OID	3300031801 Open in IMG/M
Scaffold ID	Ga0310121_10027736 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031801 Open in IMG/M

Scaffold ID

Ga0310121_10027736 Open in IMG/M

Source Dataset Name

Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4016
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4016

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	73.0038	Long. (^o)	-140.0007	Alt. (m)	Depth (m)	486
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Western Arctic Ocean

Coordinates

Lat. (^o)

73.0038

Long. (^o)

-140.0007

Alt. (m)

Depth (m)

486

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001066	Metagenome / Metatranscriptome	788	Y
F025142	Metagenome	203	Y
F054103	Metagenome / Metatranscriptome	140	Y
F064802	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_100277361	F001066	N/A	VVEDIFKIEAVGNKNLVKENKHKTISPFNSAKHLKTANIPALCDQCVYRSIEDGGNGKCPKYEAGAVCAIRDDFINLINTLDTRNPEDLKSMMDMLAKLSFENVLMALTQAKMDGNIPDRNTKSEVNTLLAIVKSINDLNSKIVVTEKTEYRQGDIENIFRQIKA
Ga0310121_100277362	F054103	N/A	MKIYFNANNKYTLEALERCGVKNVLLSHRYAYANINKYSDRFDSIFMVPGTKGKVAGGRPDKYHEFLKKKKEYYEYATQFDVLYKMDETLKYLKKEREDGIDWTLPILQENYLQHLSRLQPKTGDYICLGEVHGKLETEDQIRKLPRNVKYHGLAKGKYIEKRPFESLDTSGWISAAMSRKTEVWSGNSTFSLFFGWKGKGMKSQTASVLEKYKQNLEIVGISSNSVLEDDYSSLLKLPMAVLYMPMCKTLGIYDINFKQ
Ga0310121_100277363	F064802	GAG	MKTEESIRDLILFTKEKLLHENVDQIGMLPQTLIPPLLIDIPDDERRGIIRALRWVLADEDIFQRE
Ga0310121_100277365	F025142	GAG	MAGSIDMEGRAIEFKVKVGSRATVQLTVADSSGTAKDLSNSVTYATGLWKVWKPGGTLLINGAVTYTTRASGLISYPLSATDTVLANAGRWEGEVELLDSNGVISEQTSSFTFMIEESY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310121_10027736

Overview

Ecosystem & Geography

Associated Families

Sequences