Scaffold Ga0310121_10022871

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10022871
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4513
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007837	Metagenome / Metatranscriptome	344	Y
F016759	Metagenome / Metatranscriptome	245	Y
F094574	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_1002287111	F094574	N/A	MSIMDTKLRSFNITNSKMYERFKQIQLERGKNATVRLNELIEKEVKEADPQFKELNAVRSKDAVDIIIPNPFLMDQFHSLPIWEEYLRTLTQQQNEKLYLHLIALKNITQEFEDHKDKDDLDRLD
Ga0310121_100228715	F016759	AGCAGG	MSMEPIQRRMQNPAAGALNVPVNLVDQVTTLTFIQLGQPNTILDMYNAVDPAGAATYEYGLDKNSISTGRTFFSNSMSTASAGRAAVGPLRINSGQLQMTGTPTTALAPALDQNIVIKFSNGF
Ga0310121_100228716	F007837	N/A	LVTGLVTQPLISAKNLGLKLRTVVDLKTTAAQLVINYPAQHLGLSNSVMVDNQDAANAVTVRFNLQINAVVIAGGNFRTFNDAWIEQINLTGPSTNTQVTSQVSPIQEVAPYGQGVTN