Scaffold Ga0310121_10020143

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0310121_10020143

Scaffold Ga0310121_10020143

Overview

Basic Information
Taxon OID	3300031801 Open in IMG/M
Scaffold ID	Ga0310121_10020143 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4879
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (37.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	73.0038	Long. (^o)	-140.0007	Alt. (m)		Depth (m)	486
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016594	Metagenome	246	Y
F017724	Metagenome / Metatranscriptome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_100201434	F017724	N/A	MFADDHREVIATYKEYPEEPMKQGWYLNDGRGTWQGVICE
Ga0310121_100201435	F016594	N/A	MWLCSGVANDCKRIVIPYTTFDSYRDCSLYGYQHTVDMLNKMPETEIEKWQIHTRFSCKAEQTI

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