Scaffold Ga0310121_10012111

Overview

Basic Information

• Taxon OID: 3300031801
• Scaffold ID: Ga0310121_10012111
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6671
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 486

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F002150	Metagenome	589	Y
F008596	Metagenome	331	N
F018017	Metagenome / Metatranscriptome	237	Y
F021554	Metagenome / Metatranscriptome	218	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_100121111	F008596	N/A	SWDIATATSLLTGVAKTQINGGNNLTKPTQAVNLVEVVPYTVSSGAYTAGESIAITAYIDSFSVDLLPKRIIVPPVQAGLGTFINITVPLLEAYECNTGLQEGATSQFIISGQAQVANTVAPLLAMGLHYSTTPPNRPEHFYHKPDNESTFTTATTTTGNDFTINDGMWLEDMYVSVFAGTPTVSQSFSGYGTFSSNDFGNSLPLKVAMQPGACGLAGTTTPGNLALASYHNTHMPMKTSCKISTSFTNDVTQSATSRFIMGVGYTKQ
Ga0310121_100121112	F002100	N/A	VQLAVSLWVSGTPSSRGLKLDMSFRSQPGFEPALIKPTYDVANFGHDNSLPLNCLSGSSVTLTPSTATFVQVLEDSRVPIDEVDLFITDSDKMAMVYPANDTDFDTSWEWTPDMSAQAYQISFNFAVGMKVSAYTSGNFKISDVNVICKQIGGGEGDFTYLNKIIDPGMANMVGVAEQVAIINFSTTVSAKVFDKPITFQIKVNTDNATGTYQTGIIPLFCYLSPAVPKTWTTSSVLMHIHADLAHAFPIFRDQDNMNLLDTGIGL
Ga0310121_100121113	F021554	AGG	MIIEEIPFFTEFVLLGIILGFGYGFTKLFLNHAKDKNKVKRTERKQEKDHNLENELDKYLDNAPAIIHHLESEIANLKEKGSTPEQTQRLEGELNQARALQKYEPIIRIIGKPALKKVMSILDRV
Ga0310121_100121114	F002150	AGG	LVAIQGAVLASKLAKTGTKVSGEFLEKKLGYNFIDLVTKLALFYVIAFMIAKYMEAIIYFQGGLSTIAGFFGIKMAQADQLPKQWVELFVDTNQQTFTSTPTGTGSFNPPGWDRKYDYGSLEHQEAEPYLFPEKEVKFKFWDLVNAIVIFYIGWEAYKYYRNGGRDFLTLAIFSLLGLMVGVLSFSKFLGKFSLNRFQEENK
Ga0310121_100121118	F018017	GAG	MKNDSLNADNTTTKIDSLWANQQKIVPIPPLSSLKLHGNNCGGFRVCHTCRGERFVAIRSKWDNRITYKKCMACSGSGSIDVRTLN