Scaffold Ga0310121

Basic Information
Taxon OID	3300031801 Open in IMG/M
Scaffold ID	Ga0310121_10004074 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031801 Open in IMG/M

Scaffold ID

Ga0310121_10004074 Open in IMG/M

Source Dataset Name

Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13075
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (65.79%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

13075

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (65.79%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	73.0038	Long. (^o)	-140.0007	Alt. (m)	Depth (m)	486
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Western Arctic Ocean

Coordinates

Lat. (^o)

73.0038

Long. (^o)

-140.0007

Alt. (m)

Depth (m)

486

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013700	Metagenome	269	Y
F023368	Metagenome / Metatranscriptome	210	Y
F026709	Metagenome	197	N
F040683	Metagenome	161	Y
F043453	Metagenome	156	N
F061266	Metagenome / Metatranscriptome	132	Y
F094003	Metagenome	106	Y
F096041	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310121_1000407410	F096041	N/A	MNKNKEYIYITRTMKLNIPALICQDAVDKILSMKKQDLIPKELGTLYTRCKVKERGKNAYRL
Ga0310121_1000407411	F013700	GAGG	MPIDYRNLVYPFKDMADAPYSVVRLLNECYNDYADGNLGDGEHMASGKEVRGEFLKRIAQMGYDELKYTDIADKLEEDVYENNEHLYHKHYEPSETKEDE
Ga0310121_1000407414	F040683	AGGAG	MKKYRVWGYETQGYHIDLEADNKQDAHDKAMDIDREDWQIGNDGLNTCFDINKKNIERID
Ga0310121_1000407419	F061266	AGGAG	MFGTKEEELKLKRFMVMCKSKRGNTFYHEKSFYTLADADAYANLVRRQEDEQSNEFYLFEQSKHYGNGKDKDA
Ga0310121_1000407424	F023368	AGGAGG	MHKYSKDTTQYKDVPNDAQVLTTLDKYDSNETENLGMWLAHLSMPQMCASWVSEDAFNSLLERYKIDITSYVKDDERITTSIKDEVRSELFYLINKDKYKKRNLIKALRNKFPDVNSGVICRMIKKYLSLRVLEIDRTYKTKPFVIKGKYYIN
Ga0310121_1000407428	F094003	GAG	MNFNGGIMDKIYTGAGVVSILTVLSVLVYIIIIGV
Ga0310121_100040744	F043453	AGGAGG	MSEHQIKIVVDKKNNHGTECYYPVCELSKTLVKLKGHTKKVLTRSDMFLLSKQFDINLAPQKLF
Ga0310121_100040745	F026709	N/A	MYIILIKDNHRFRIYTNEIFSLYKDALDYAQRSKFKKNVNWKIEEFDYKYFKR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310121_10004074

Overview

Ecosystem & Geography

Associated Families

Sequences