Scaffold Ga0310122_10054979

Overview

Basic Information

• Taxon OID: 3300031800
• Scaffold ID: Ga0310122_10054979
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2110
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 3678

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005464	Metagenome / Metatranscriptome	400	Y
F007317	Metagenome	353	Y
F039182	Metagenome	164	Y
F101872	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310122_100549792	F039182	AGGA	MKWISIIVLAVALSLNGCAKDASGDDSKDEVAVSTDVEIDKEASGDIIWAAIVMTWNPVHRTIDKEFTTEVDCWNYYENGVGEGKFGAQHLDHQNNPPTKDFNFGPDYLEYPIRTYRGKDGEGEVWLTCDIKSRYKGL
Ga0310122_100549793	F007317	GAGG	MKQIVKEFKENGNGEFYLEFSKDDLETLGLEGGDSVEWMQLDDGEVWKKVTKKAWSI
Ga0310122_100549796	F005464	N/A	MMNIRDKDNVLRIAGWTLSLLCMTIGSYFLWPHIHVALLGIVFFYLGIRIFNFATFKEYKEQRVKLLLKLSEW
Ga0310122_100549797	F101872	AGGA	METLKQIIQDIKIRNSLQGQTNIGSLANSFGLSEEDIRILTFASKPIKEDVKYEELQFDQNVFKKPSIYETLG