Basic Information | |
---|---|
Taxon OID | 3300031800 Open in IMG/M |
Scaffold ID | Ga0310122_10024505 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 3462 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → unclassified viruses → Circular genetic element sp. | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Canada: Western Arctic Ocean | |||||||
Coordinates | Lat. (o) | 74.6947 | Long. (o) | -146.6612 | Alt. (m) | Depth (m) | 3678 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F020469 | Metagenome | 224 | Y |
F023247 | Metagenome | 211 | Y |
F051571 | Metagenome | 144 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0310122_100245053 | F023247 | AGG | MTLSTGPSLNFFGDHMFAWSGQKQLTAGSTTLLDFISPNRYYSVVTNVSFDYSGCSAGDVLSWTLQGNEEALHVSKFIIIDAGIGPQFPNLYYTIPPNTGMKVLATGPTGSMTVVVEGKEVQ |
Ga0310122_100245056 | F051571 | GAG | MVRRRGNSRRRAPRTFGINVIELGTALALISQVNAGAAAQSFLAGNLNAGLSTLSKAAKSNKQVIIKTLIGSMVAKVAVKTLSRGSPVLASLGPIKVRA |
Ga0310122_100245059 | F020469 | GGA | VVISALELLGYFIAWSLFYFGISHYIAKLSKDKWVEWAKSSESDDDLLIILEPIVDEIEGRTHEMLENFQSSFFGSLGAASKKMDDATGQSTIKAITKDNPIMGLVAEMLMKRSGIEGLLNTQNNPEVGGKQSQKSPGLGLK |
⦗Top⦘ |