NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310122_10024505

Scaffold Ga0310122_10024505


Overview

Basic Information
Taxon OID3300031800 Open in IMG/M
Scaffold IDGa0310122_10024505 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3462
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.6947Long. (o)-146.6612Alt. (m)Depth (m)3678
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020469Metagenome224Y
F023247Metagenome211Y
F051571Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0310122_100245053F023247AGGMTLSTGPSLNFFGDHMFAWSGQKQLTAGSTTLLDFISPNRYYSVVTNVSFDYSGCSAGDVLSWTLQGNEEALHVSKFIIIDAGIGPQFPNLYYTIPPNTGMKVLATGPTGSMTVVVEGKEVQ
Ga0310122_100245056F051571GAGMVRRRGNSRRRAPRTFGINVIELGTALALISQVNAGAAAQSFLAGNLNAGLSTLSKAAKSNKQVIIKTLIGSMVAKVAVKTLSRGSPVLASLGPIKVRA
Ga0310122_100245059F020469GGAVVISALELLGYFIAWSLFYFGISHYIAKLSKDKWVEWAKSSESDDDLLIILEPIVDEIEGRTHEMLENFQSSFFGSLGAASKKMDDATGQSTIKAITKDNPIMGLVAEMLMKRSGIEGLLNTQNNPEVGGKQSQKSPGLGLK

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