Scaffold Ga0310122_10007045

Overview

Basic Information

• Taxon OID: 3300031800
• Scaffold ID: Ga0310122_10007045
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_Bottom_1051
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7008
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 3678

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011155	Metagenome / Metatranscriptome	294	Y
F022429	Metagenome / Metatranscriptome	214	Y
F034604	Metagenome	174	Y
F054945	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310122_1000704517	F054945	GGAG	VKWVVLIYLAMWTNTPEVMKYTRLEFPAHDYYDCIDIAEEINDIENAYNSETAYVRSFYWVYTNMLDEIKAECVYADPIAPEPKWFKEYTRKQWLEDKKR
Ga0310122_1000704521	F022429	AGG	MADLVGFSEIWNGPSFLERKSSARRMAERDAEGKKKRDKSGKLKAREHFAKDWDKDLWD
Ga0310122_100070453	F011155	AGGAG	MLDTVVDGVGYVDVMTDSLYVIREGAFGFLTDAKESPYPWMFAAAYVAGALPLALVFFGFQWIECEIVQCGLVSLGG
Ga0310122_100070458	F034604	AGG	MIKEITLYDEKIIIDFAGAPYWKYYVLQLYFMICHRKRLVDYIETE