NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302319_10758690

Scaffold Ga0302319_10758690


Overview

Basic Information
Taxon OID3300031788 Open in IMG/M
Scaffold IDGa0302319_10758690 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)970
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000335Metagenome / Metatranscriptome1276Y
F001997Metagenome / Metatranscriptome607Y

Sequences

Protein IDFamilyRBSSequence
Ga0302319_107586901F001997N/AMIAGVKSPQREAHDDIKSIYGVDIPQNSGTIKQVVQIAQSQFGGQIAVAVRSPSVRQLVMLYSEATGQKMPLSATTPYAGSLVEQGGKLYQQASYQDGQAHAYASNIPTLGGIAAGTYPTPGGPNTAGGSGATYLSLNISGNDAANFMTGQFVTPQFVTDQAMAAQYSSYGRTQQSANMQLPGLTVA
Ga0302319_107586902F000335N/AMPASLCTAFTELREYVQLQNQYHDGTIQRSQLAQTSRRTFRLSKRLSASVLSALYNFWVSQNAGLTPFAFYNPFDVASGQQIGSNYDPAGNNTQGRVTAVFRGNWAQATDVARTNVQAL
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