Scaffold Ga0302319_10267118

Overview

Basic Information

• Taxon OID: 3300031788
• Scaffold ID: Ga0302319_10267118
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2049
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta steineri (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0477
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024018	Metagenome	207	N
F036061	Metagenome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302319_102671183	F036061	GGAGG	VLDNSDNPAVTQQGVHAMEMPADLFSDPPFGHLFAELTDLAAATAAGFRTVLVPPDTPLFCFYCHDTEAPEYRLRRKAGKYVALCHRPGTIEGCWDRDVAPMCEYKNHEAVQCAQVAEWVVAFGKDMLMRTHRCLIHVPPALSDVSEHRVFPI
Ga0302319_102671184	F024018	AGGAG	LSAHPTTAIDVAKLLADDNVSTADRIWSIDFEVKMPAELITEEDLKCPDCGVVHDPSLENARVVADTITVLGGPDAQVSVDRVREYVLNRELEAGLRMTDFVLTGVKLLAAAEVV