NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315900_10260676

Scaffold Ga0315900_10260676


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10260676 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1471
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053078Metagenome141N
F091586Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0315900_102606762F053078GGAGMRLDSLLSWFRDHQDSLPLVIHRHNLMDDGGVPAWTGDFATYLDHAAHATFAETEERKVHDGTAAEQATLLRVTIQRYKYPMHSALHTLKRCRAKQGEPKPHEIGVALIATRGNLTASQEWLMRKYPLMLHREIWLEAAERTLRLLHERYTETPRAIVRGKSDSQLNAEVTNAQASDQA
Ga0315900_102606763F091586N/ANGAHLRSILATHYTRLDPVAIPQMARALGISKRTLYAYIQEERRVPEYVEERIINLFGEIPESGWRIVQARGLHTIIAPEEVEMAQPQALHLNVSADATWTEIAQASVLAVSEKLHGHTMGEWVGNPEMLDVDGNPLDLVAECRRCGMLVAIDAGLKEVNGFAWRAFCGSENLWKGAR
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