Scaffold Ga0315900_10044858

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315900_10044858

Scaffold Ga0315900_10044858

Overview

Basic Information
Taxon OID	3300031787 Open in IMG/M
Scaffold ID	Ga0315900_10044858 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4734
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.6898	Long. (^o)	-83.2813	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014614	Metagenome / Metatranscriptome	261	Y
F021513	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_100448587	F021513	N/A	MSMYVLSESQFDQITKALEAARFALETSQHVQLDLTKPKQTIPLPAGEKLVRTSDVQKAKSQSKTRKSSHKGQRGVAVLTEAKVLEIKRQLAAGGKSVVKIAREFGVHATTINCIKWGKTWKNVQLQQPAAVVVVD
Ga0315900_100448589	F014614	N/A	VETHGSHPDTPARSQLLRMTDWYADYYRQSRGYNDNDLRELRSVPRKPSTYVPDVFKHRFADPAEYDAWVEERRRLYFG

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