NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315900_10030506

Scaffold Ga0315900_10030506


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10030506 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6011
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Terrimicrobiia → Terrimicrobiales → Terrimicrobiaceae → Terrimicrobium → Terrimicrobium sacchariphilum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014513Metagenome262Y
F054624Metagenome139Y
F056542Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0315900_100305065F014513N/AMADTFKEMTELVKGFVGDSGTCSDDRAYKAVNQARRLLWNKRAWTTQEEYVQICCVNDCFTLPSRYEQIKLAWIGNRPASLADEWFNATDSYALHAENSCHRGIVEVGGLHVLFRDYTTHPYQIGVMAEEAEDIGVELMFEAQDQYDTYHKVKVTTTNPPTLAKSDLLVKGIRGVTKPVTKGRIRVYAYDTAIEAKTLIAIYQPNDAHPTFRRFKAPRTCECITLYASKKYFDLTDPKELMEFTPDAMIYAILALNSRENRKAQEFLTNLSLAVQEQEKEMEGTEIPTAAPLRIANFQRPDNLIGNYLGSPSADDYFYYP
Ga0315900_100305066F056542N/AMDGNTSRINKTKNMTPLKGTDPRLVSGGASTRGTIREGMGNMPNLGAKKPTPFSSKPLPTVGKMVNQFGGPQ
Ga0315900_100305068F054624N/ASRDTPWLKRFASTMYINNYLINTVAPQTKSTTATNGVTGLHRYHRGMVVLDLDQGSAPNPDAQLSFRWNGIWTGVRPTQLLTALINGEQRGFVLSFDKDDKNRLYEITGERGSDYGPSGTRQIESFFTTGRYDFSRTQQTNRFLRKRLTGGEMWISEIPGEVTSSVEYRSDSNPCWSELKIPSTYGCPPCSPIVNDNCYPQRGGNLFKRYKFTSPDPSDCSGITDIPVIEGSEFQIKINLSGNATVDRVRLMANIKNNEDSPIGDCPTDEDNYECPQFLCCQERYWDYSIA
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