Scaffold Ga0315900_10028691

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_10028691
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6240
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F005705	Metagenome / Metatranscriptome	392	Y
F056313	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_1002869112	F056313	AGGAG	MQINGLTERQVELLDTMWAIEEFEELEAWMATLCRADRVEAENLQQLVILEAFEELLDEDGYPDAKRVIDKFRLTK
Ga0315900_1002869113	F005705	AGGAG	VKITVKIPKQVRAHIVLFCKDTPFKQKVVASKIKYKRNPKHKGARHAD
Ga0315900_1002869115	F000652	GGAGG	VTGFQSKRASALDKFKGQGMKKVIVRTELMQELEVPDDWEREDVLDFLGEFQSFRTAFQGVSNEDQTARIVDLGVVIETVEQLGEECFDE