Basic Information | |
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Taxon OID | 3300031787 Open in IMG/M |
Scaffold ID | Ga0315900_10020754 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7629 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (21.05%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.6898 | Long. (o) | -83.2813 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001775 | Metagenome / Metatranscriptome | 636 | Y |
F029443 | Metagenome / Metatranscriptome | 188 | Y |
F047062 | Metagenome | 150 | Y |
F048316 | Metagenome / Metatranscriptome | 148 | Y |
F049637 | Metagenome / Metatranscriptome | 146 | N |
Protein ID | Family | RBS | Sequence |
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Ga0315900_1002075410 | F001775 | GAG | MEFSTDNQKIRIAILAFIAGVILAFIVFPRPEQETVYKFETKVETDTIYSHVVDTVYVPKMRIKSQILRDTILIDYKPKISLFKTSIPSEYGSTHVSGEVLGEVLKMTATNDFKIPVVTNTITETKTETIIKKPKGIYLGAGVNSLLDPLAKVSYLDNKYLFEYSYQPVTKIHTLGVSKKLF |
Ga0315900_1002075416 | F047062 | N/A | MNYETENFHDQEITFTYEGQDYLWIGDYTIEHFGEDESEFAPAYGEMEITIDYTRSLSSYEHGYEVIPTRSMLMELELEIERNY |
Ga0315900_100207543 | F029443 | N/A | MTLVDLVKKIKAIQEAHPMIRTFGEGDIYDYVDNGGEIEYPVLWTVVRPSVYNGTTLRYDLVLLFADLLTEDKSNRLQIQSDQLLVALDVLAKLKLDNSYTFNTAPNAAIEFFQERFDDFTAGVSIAIQVTAPMPLNLCVIPTIA |
Ga0315900_100207544 | F049637 | N/A | MNILKSDELGVPSTLIAIFANVSQVIGLSFVNMFFTWIISILSIIYLIYKIKNEKGKFDQKKNEKGK |
Ga0315900_100207546 | F048316 | GGA | MKNFFNWAKGFLSEGGEASSKRLVGVLSGITLCCALFLNQNEPLVYSVAALSAAALGITAAEKIFKKPNNNKNEDQSTS |
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