NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315900_10020754

Scaffold Ga0315900_10020754


Overview

Basic Information
Taxon OID3300031787 Open in IMG/M
Scaffold IDGa0315900_10020754 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7629
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (21.05%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001775Metagenome / Metatranscriptome636Y
F029443Metagenome / Metatranscriptome188Y
F047062Metagenome150Y
F048316Metagenome / Metatranscriptome148Y
F049637Metagenome / Metatranscriptome146N

Sequences

Protein IDFamilyRBSSequence
Ga0315900_1002075410F001775GAGMEFSTDNQKIRIAILAFIAGVILAFIVFPRPEQETVYKFETKVETDTIYSHVVDTVYVPKMRIKSQILRDTILIDYKPKISLFKTSIPSEYGSTHVSGEVLGEVLKMTATNDFKIPVVTNTITETKTETIIKKPKGIYLGAGVNSLLDPLAKVSYLDNKYLFEYSYQPVTKIHTLGVSKKLF
Ga0315900_1002075416F047062N/AMNYETENFHDQEITFTYEGQDYLWIGDYTIEHFGEDESEFAPAYGEMEITIDYTRSLSSYEHGYEVIPTRSMLMELELEIERNY
Ga0315900_100207543F029443N/AMTLVDLVKKIKAIQEAHPMIRTFGEGDIYDYVDNGGEIEYPVLWTVVRPSVYNGTTLRYDLVLLFADLLTEDKSNRLQIQSDQLLVALDVLAKLKLDNSYTFNTAPNAAIEFFQERFDDFTAGVSIAIQVTAPMPLNLCVIPTIA
Ga0315900_100207544F049637N/AMNILKSDELGVPSTLIAIFANVSQVIGLSFVNMFFTWIISILSIIYLIYKIKNEKGKFDQKKNEKGK
Ga0315900_100207546F048316GGAMKNFFNWAKGFLSEGGEASSKRLVGVLSGITLCCALFLNQNEPLVYSVAALSAAALGITAAEKIFKKPNNNKNEDQSTS

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