Scaffold Ga0315900_10008379

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_10008379
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13312
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (79.49%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F060726	Metagenome / Metatranscriptome	132	Y
F062580	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_1000837920	F062580	N/A	MKIVTINMELVIDEDLTDKYDIAIYLTDKLYSDPEFFGDFGEENILEIKEFV
Ga0315900_1000837930	F060726	GGA	MYRSVLLTDREISLLKRVVGDYLHEKLTPERQNLTVIFNRLREVKPLITNNQFFNYGK
Ga0315900_100083796	F000325	GGAG	MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLGNGCYAEATENQYKNARTAGFANVVTEKNKIRAMILDAKRREKSIRWHERGDWFLNGELDLDYVANVTWACESILADGDSLPDMWFYTHIYDTRLVSLEKYMNVYASVHDDNDMNEAKSQGFKLFAWCDSDMKVAPKRPKNKKKADAWRASLPKLVVLNESKFVVCPEIRRGRDIITCTGTKDSISCDLCVRGLANVLFPAH