Basic Information | |
---|---|
Taxon OID | 3300031787 Open in IMG/M |
Scaffold ID | Ga0315900_10007964 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 13746 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (65.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.6898 | Long. (o) | -83.2813 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000903 | Metagenome / Metatranscriptome | 843 | Y |
F012452 | Metagenome | 280 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0315900_100079641 | F000903 | N/A | MITRIEEIQCIISAVEHCKDRNADHATRWHKTPSWFEYVAQMAESMAAEWIVAKRLGYDYAPGTTWDKSKADVGEHIEVKWSANPDSNLWIQDSDRHDRDIAVLVVGNTPKMHIVGWMPVAVAKKPRYRNASQNNWSVPQINLQPIETLMRSNYAHPAI |
Ga0315900_100079643 | F012452 | AGG | MAGFLENYEGNKERTDRWLKTFPQGRLEAHIIEFNAEKGYVLVQAKAWRNQEEKEPAGIDYAFGYREAFNTNMKRWFCEDTTTSALMRVMALVMGGTEKATKETMEQVKINDATKPQDYDYWTTKFGDVPSYKTADEAEQSGIPSLGSSMDEIAKQLGGELVQEAPQCSHGHRIWKQSHHGAPKSWGGYFCTERTKATQCTPLWYVLRSTGKWEPQV |
⦗Top⦘ |