Scaffold Ga0315900_10005183

Overview

Basic Information

• Taxon OID: 3300031787
• Scaffold ID: Ga0315900_10005183
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17991
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (32.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004208	Metagenome / Metatranscriptome	448	Y
F020144	Metagenome / Metatranscriptome	225	Y
F022879	Metagenome / Metatranscriptome	212	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315900_100051834	F020144	N/A	MPYNTLIHTRPPMSNFYTKLPGTDVLRSKIDVFTMSDPDDEKIFHRVELTVDNGGVFITACEGGAREDMSIAHKDLAIAVAYGILEAYGAR
Ga0315900_1000518343	F022879	N/A	MMFDLKQQHQVQVSRLQEKITEQEQEIAQLKTLVSLLSIEREYDC
Ga0315900_100051836	F004208	AGGA	MTYDLNPEAKAFSYTREELFECITKIVAHPHKTITEHDQSRALAILVVIDDYLTNYTESDNNGGHYVAEQDATDFTDFVRFKLCIDDYDYVDVNEVLK