Scaffold Ga0315908_10052146

Overview

Basic Information

• Taxon OID: 3300031786
• Scaffold ID: Ga0315908_10052146
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3143
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002227	Metagenome	580	Y
F010673	Metagenome	300	Y
F085601	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315908_100521461	F002227	N/A	MKLTIQSKQNAQTIVDLFNAILTGEEAENGATPLSIYDDNKHICSLIAKDGTQILELIIEREDGDRLLQIGEVEELK
Ga0315908_100521465	F010673	N/A	MNPKLIPILEKLIARDTVLSSFEARRLPLSARAYVRHLYRMDDSFTPEEQDLIEELPPFADDIADSFRAGTGGDDSVYHLFQDGSLWLSTNAYSSVWTDARDFAVEILLPRMTLSRMDADLLRAIDMGDAVESVRQDFFTAFARIVSHELEIQWSEARERWYNYCQSTGESDRLELGGYRQGEAEAREYLEWIKTIA
Ga0315908_100521467	F085601	N/A	MNYYVMQTALSSGSKPQLVHWSKSESDAVAYARQQLDLWREVGVPNPPRYEVHYSGLRGSALWSSLD