Scaffold Ga0315899_10542435

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10542435
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1107
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017469	Metagenome / Metatranscriptome	240	Y
F024719	Metagenome / Metatranscriptome	204	Y
F026822	Metagenome	196	Y
F076901	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_105424351	F076901	AGAAG	LILLVTLGLLLVGQDKLFPPPLGRIPDGVIENRKATQDEKNRNRKLAKDYAAAGWGWSGREWECLLALWTRESR
Ga0315899_105424353	F024719	GGAG	VGEIIELPNRGKITVIFYEVSDSQGIAIWGGENPTQALKWYRNSPAGSKIWVSQWEADEEDAKQVLEPMEITPIVLATITDCMGRWGNG
Ga0315899_105424354	F026822	AGG	MSEPRYLEGDDYALNGVELDIVKCKECASEYDYAEYHSYTCSDCEDKMIARERERVSG
Ga0315899_105424356	F017469	N/A	ICQFCGWEIRKPEWYNSYDGSYACDNCLMDSATEREKEREGAR