Scaffold Ga0315899_10349477

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10349477
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1450
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004723	Metagenome / Metatranscriptome	426	Y
F046324	Metagenome / Metatranscriptome	151	N
F048935	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_103494771	F004723	AGTAG	MEKFDKFIHTDIVGKKHELTYTGTRRIVKDCEFEFFVDDKGDSCFFTDTEVKKMERIEE
Ga0315899_103494773	F046324	N/A	MICLKVKKEAKLEECAVPWSGDTLSVCNKCRMSIWDFDFDDFHIMNDGEPFIN
Ga0315899_103494774	F048935	GGA	MNKIKKLNAEFKKANKAQKRVMIAQDVLAQLKAKRYVAESGCWVKPNIDSAWEQKLSHHDSVQELFIEQKIESCNVCALGGLFMSCTNFNNNTLLEDLDFASSELGDLIEEVKLSNKLNKIFSVKQLKLIEVYFEGNDGYFYENREYDTVKAFYIKYPSDKKRLQLIMENIVKNDGTFVPKKLKV