Scaffold Ga0315899_10251254

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10251254
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1764
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038593	Metagenome	165	Y
F057985	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_102512542	F038593	AGGAGG	MSQSKPQFRTVEITLSAPFDGWTATMKAEGVPARVFIELQSGSAERALNALQKLVIKHNFLTEDGEPATEVLDAPMDALSDAISKWSDAVAALPPR
Ga0315899_102512543	F057985	AGGAG	MAANSLDRLTISFNVDSNYKALQLGFLEGANPGAYKRLLSIATLNAARTMVRPMRAEAPVGRTTKSPGRLRKSVTARRARFGTPAAVVGPRAGRSRDGGSGGAWYRWFVTSGISGVRQTKNGPKAVKAVPANPFVTRVSKNAAHQKTAMEAMAKTVESFFNNDAFRRTILKFKRGR