Scaffold Ga0315899_10151253

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10151253
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2366
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050892	Metagenome / Metatranscriptome	144	Y
F100355	Metagenome / Metatranscriptome	102	Y
F102508	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_101512531	F050892	N/A	VDNAPAWQPCDALRIVMGCGCFVAIHGRSRQITADHGRSRQITADHGRSWYVLETGANRAHPPSLHESMITDPRHREILHRAIDAQTVVADELQSALNARMALPAGHLQRLETRDLWRDSRALEALISGAHDLLTGNASAVTLQGRSQP
Ga0315899_101512533	F100355	N/A	MTKPTPKRRPGPGKRVSGAIYDAAGNSVTVDAHLSAAAYEAVKQLQQETDEPLAGAFRSLIFKGAAALGFSDSVSAIDALAAANGGTTDARAVHHLVRLGAGLEPILINPPMP
Ga0315899_101512534	F102508	N/A	MNSSPTNRPSFAEFIDINRLDAVIYHLQTVRASWRAMAKPQRIDALRVAALSLGNIADRQLPAGERRALGQPTHYMLMGVIALIASTLAYTVGVEQGRARCPLGSAPTVVR