NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315899_10068724

Scaffold Ga0315899_10068724


Overview

Basic Information
Taxon OID3300031784 Open in IMG/M
Scaffold IDGa0315899_10068724 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3673
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016527Metagenome / Metatranscriptome246N
F029414Metagenome / Metatranscriptome188Y
F093866Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0315899_100687242F016527AGGAMKKVLVLVSLLTALAVTAGDNSNLSVEAGYNNQYIVNGVARSEGSAFVGVGAVKSLKYADVYLGGILLANGDLDQSHWTLGAGKEVEVWKDVFSARADATVTRHQAGSFGIPNSTEFGAKLALPNKLATPYVRGAFDIDLDQKGAFVGLERAQKLPFGFVITPAVEYGKVFGDTSDYTAVNAKATLTRPFEFSFGVLTPFASVGWYDNNFNAANYNWATREFSGDVVYSGGLRLTF
Ga0315899_100687243F093866N/AMNELSKIDMANLVFSQDKKIKIKDMLCSKYGATDVQYRDLTYGICIDVVGTDSFRFVKNAILNTLDVHEDTLSVLGESKRTLKASYVYLPEKDKVLNKRLKKLKTA
Ga0315899_100687246F029414N/AMISLKSLLAEASDVKTVYRGVNPAYGDVGLGINSTKIGDKLVATLGPNHTENLEVAKRFGKQIITTDLKGPGLVLPHYNDIINLYKQYENMLPPGLAKQIKYSSGQEQLELIQLAGKELRKILSKKYGYVKSPLAVSDANFLREKGLTGDLYIPLR
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