Scaffold Ga0315899_10023269

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10023269
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6568
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044374	Metagenome / Metatranscriptome	154	Y
F065559	Metagenome / Metatranscriptome	127	Y
F067648	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_1002326911	F067648	N/A	MTRNELKNLINMFQSSDAENHVVAFHAIENSKLDDNELVLLYKFSGQPYAQWKKEIPKTAERINNVIGDEAIAFSSARVLGIITNNKAAKHVIETFLEFFIRDLTSMLGSIGYPMDKVDINVKIRDDGQSTESK
Ga0315899_100232694	F044374	N/A	MSRKEREREFFAYHHDKFRRAQVADPFFVLKTAFFQKGKYGRQVQLFESELKRGEDIYIEFIDIIRDESGKEQGIEPAYADRALFKCKANPYYAEEYDVKEGTNSNGDNYLAYTVPLSELMVLLPDGSEITHNLYEKRKAEAPKEQVTLSVFPDFEEQFIPKLKEKTEELSLDLPTEDEGMAEITIRDFAAIIWQKPVSTKTWLNNLIKQQ
Ga0315899_100232699	F065559	N/A	MKEIDMIGTLVRLADLGVTGIKVQYEGSGDSGCIENVVYTTEKMDRDEEAAFDEINYIEVWGQDVQHLQELDSGLHSDIENFVEDKLLQDIEDWWNNDGGYGSVCILIPSGKYKIYNDIRITQIESYFHEGSLIQKTL