Scaffold Ga0315899_10022171

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315899_10022171

Scaffold Ga0315899_10022171

Overview

Basic Information
Taxon OID	3300031784 Open in IMG/M
Scaffold ID	Ga0315899_10022171 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6734
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (5.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.8268	Long. (^o)	-83.1913	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032657	Metagenome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_1002217115	F032657	GAG	MIVIEDFIRTSYPLYTIEEFRIAFKMAVQGKLDCSTEHYEKFSPKFIGQVMLAYTKKAVEVRKMIKPVLSEIEAPKLSDEDIVSFTQKEWLESAKNDFNKVFNADRVFAILLRQGKLKFEPSEMLNIIQLVREDNLLKLNKLYGQDAKEFSKKLKDDNFIDTQCKKLALVKYFENIPN

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