Scaffold Ga0315899_10010017

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10010017
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10152
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (34.78%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001807	Metagenome / Metatranscriptome	631	Y
F002985	Metagenome / Metatranscriptome	515	Y
F003601	Metagenome / Metatranscriptome	477	Y
F015201	Metagenome / Metatranscriptome	256	Y
F020342	Metagenome / Metatranscriptome	224	Y
F025487	Metagenome	201	Y
F087066	Metagenome	110	Y
F101044	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_1001001710	F101044	N/A	MTTLSPATTAVVTAFRERYTETLRPGPFPDYWQEACLAAALTALAVRIKSADGIRQDVLDIVNELEAVGLYDND
Ga0315899_1001001714	F025487	GGGGG	MTSELIDLDLVDKTIALIPEQDWPQVQQVIVTTLVDNMPGSVLETLTGSYDNFDRAEGILYDYYQLPDKQQDLIVDAFKIMGAANCLELLSCLNLSNSQQ
Ga0315899_1001001716	F003601	AGGA	MSNYTDEQLLAMAMANIGEYIHDNLPQYILIEDDPRNEDDYDSWTYGMEVLPHDHTWQHASIDVSVSPSEGA
Ga0315899_1001001719	F001807	N/A	MTVLAIEDTYFTQTHVTVTAVVDDMRLLYRATRFDPEEWAPALCQTTIELDPEEPIPLDEDGFCAYLDYLDPQWQLVDTSDE
Ga0315899_100100172	F002985	N/A	MSYVIACWRWGTPHAITANKETNQFELIPLDSDVALNKIFSHPYRAGAQQILTWINDNDEDLACKELSIQDESRFRK
Ga0315899_1001001720	F020342	N/A	MSATLDYLNMFDRINLADCAKRRASANVVDETRFNGEYDTARLWMKYRLIKTTQHSYVED
Ga0315899_1001001721	F001120	GAG	MTKKSPISFDRTIHGVNITEHGIKSVSKQIKLGPFQLTVNANPNGVKGSVSIPGTGLSIPNLKII
Ga0315899_100100175	F015201	GGAGG	MNKALIVYLVDRKKKVARKDVESKHAIAELKKQSAATF
Ga0315899_100100177	F087066	GGAGG	MTENQIQFLRGCCATILAFAASGLIAAIFLSPDEPKNNSKFEVLDQYEGCSVIRYTDPTTRWHYFLKCS