Scaffold Ga0315899_10005514

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315899_10005514

Scaffold Ga0315899_10005514

Overview

Basic Information
Taxon OID	3300031784 Open in IMG/M
Scaffold ID	Ga0315899_10005514 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13660
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (88.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.8268	Long. (^o)	-83.1913	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007405	Metagenome	351	Y
F041636	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_100055144	F007405	AGAAGG	MIGVAPKHSFTYSNTRVNVFHANIGEGLPKHIHTYSHATMCNSGSCLISLEGRTHTINKNSKPLNLPAGEWHEIEALEDSTVFVNVFQEGKQ
Ga0315899_100055147	F041636	N/A	MSNLTDQELEDIVEKVTERVIEKVYTSVGKSIVTKFFWVVGVAAISLVTYLAGIGQIKVG

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