NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315899_10001231

Scaffold Ga0315899_10001231


Overview

Basic Information
Taxon OID3300031784 Open in IMG/M
Scaffold IDGa0315899_10001231 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29623
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (20.51%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026831Metagenome196N
F035761Metagenome / Metatranscriptome171Y
F048260Metagenome / Metatranscriptome148Y
F077292Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0315899_1000123111F048260N/AMYTRTNARNKTNFVGHNTSGVEIYLSTPLPKAKKASRLTLRTGKTRVDLDGRQIKALREVLNAGFNAKA
Ga0315899_100012312F077292N/AMYINMKSSKQLVNKLVKETLEQKYTNASASWSDLIEELSKEIKKPIELDDAGNYNVCECEPYHISIRPIVHGICDVQAFKDYSDRTKKLFMKFDDVKKFVKDYLSSKDLNYVDSALTKVVDNTKDKQGGLSADKEENMEHMVDFKDNYKPIKNIKAEPMNKEIDNPTEPMQVVDKFVKSSEYKSVNPKYTPPTLPKALQKLVVKYTKGGKAKKK
Ga0315899_1000123134F035761N/AMDQFVTTVKLNQELYNQFKELNIRGKISFQDFVNKCLERYLSDSEFQSEISESIAQKLSFNAPFSLSKESK
Ga0315899_1000123136F026831N/AMKKTLLILLTAVNLYANDLFVYDTNGQVELTEVINNKLNVLTTTVGKTYTITNSLNINTTNSSVSYIVPYRIAVFHKENTSTYFNQTSTEYVNDFKLPEVVKVKDAMFNFTVNGELYCVSEGTNVNTLLTSLCSVAFGQSTFFVKSNEKFTHLYVVSGTVTALDNKSKKKKELKSGDYLVVTPQVIMNAREASVTKLGNSFSVKEVEDEEKEVHSKELIALKSKLDNTLFVNYGQNISGIKLQ

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