Basic Information | |
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Taxon OID | 3300031784 Open in IMG/M |
Scaffold ID | Ga0315899_10001231 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 29623 |
Total Scaffold Genes | 39 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (20.51%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.8268 | Long. (o) | -83.1913 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F026831 | Metagenome | 196 | N |
F035761 | Metagenome / Metatranscriptome | 171 | Y |
F048260 | Metagenome / Metatranscriptome | 148 | Y |
F077292 | Metagenome / Metatranscriptome | 117 | N |
Protein ID | Family | RBS | Sequence |
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Ga0315899_1000123111 | F048260 | N/A | MYTRTNARNKTNFVGHNTSGVEIYLSTPLPKAKKASRLTLRTGKTRVDLDGRQIKALREVLNAGFNAKA |
Ga0315899_100012312 | F077292 | N/A | MYINMKSSKQLVNKLVKETLEQKYTNASASWSDLIEELSKEIKKPIELDDAGNYNVCECEPYHISIRPIVHGICDVQAFKDYSDRTKKLFMKFDDVKKFVKDYLSSKDLNYVDSALTKVVDNTKDKQGGLSADKEENMEHMVDFKDNYKPIKNIKAEPMNKEIDNPTEPMQVVDKFVKSSEYKSVNPKYTPPTLPKALQKLVVKYTKGGKAKKK |
Ga0315899_1000123134 | F035761 | N/A | MDQFVTTVKLNQELYNQFKELNIRGKISFQDFVNKCLERYLSDSEFQSEISESIAQKLSFNAPFSLSKESK |
Ga0315899_1000123136 | F026831 | N/A | MKKTLLILLTAVNLYANDLFVYDTNGQVELTEVINNKLNVLTTTVGKTYTITNSLNINTTNSSVSYIVPYRIAVFHKENTSTYFNQTSTEYVNDFKLPEVVKVKDAMFNFTVNGELYCVSEGTNVNTLLTSLCSVAFGQSTFFVKSNEKFTHLYVVSGTVTALDNKSKKKKELKSGDYLVVTPQVIMNAREASVTKLGNSFSVKEVEDEEKEVHSKELIALKSKLDNTLFVNYGQNISGIKLQ |
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