Scaffold Ga0318547_10176378

Overview

Basic Information

• Taxon OID: 3300031781
• Scaffold ID: Ga0318547_10176378
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1268
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001698	Metagenome / Metatranscriptome	650	Y
F014996	Metagenome / Metatranscriptome	258	Y
F029532	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318547_101763781	F029532	N/A	DWDAVRRLASFLADAGEDGTAAELKIQLGKAVWDTYREPLQDISGRMPPAAIASAIDVLRAVLLEVPDDVPDRNREVNRFLPPLAASVHAIMRDQEIDIPYSSRVEHIATGGVARYPDIVKLSLDEIAAEFEGTCHRP
Ga0318547_101763782	F001698	GGA	MSGVINDIDALAEFRAHLMQFNRDLAENFATIRGHWRELGEVWRDDMYRQFGEALDEVTPGITLYLAATEGHEAHLAALIERLRSYLETGLGAGAGTSRTETDRG
Ga0318547_101763783	F014996	N/A	VTTIHADIDALKGFHEALVRFRYAQRGVAERGGHEIEMTRASLAAKASRWQSRLEQCQAELEACRAGGGEEAADCSAYARAVEQTGERLEHIRRWQQRVDAEASEFGGTASAYLDLLEVDLPRAESRL