NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318547_10006437

Scaffold Ga0318547_10006437


Overview

Basic Information
Taxon OID3300031781 Open in IMG/M
Scaffold IDGa0318547_10006437 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5073
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001388Metagenome / Metatranscriptome708Y
F016894Metagenome / Metatranscriptome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0318547_100064371F001388N/AGEERARELRARGAGMDWDQAVAYTLTQATQALSELQSQTQP
Ga0318547_100064378F016894AGGAMRKRDIALSLAIALAAAVLISSCASQNVPDSNMTVRCTENLTGVDVTNGGVAGTGLCAITGLLHDGGPTTDYRTQKGETVFIRRVVTGAKGTITFMITIHLVGAPAEPWTIASGTKTYAKLHGQGYQVVDNYSGSPATFVLKGKASQVSA

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