Scaffold Ga0315331_10731335

Overview

Basic Information

• Taxon OID: 3300031774
• Scaffold ID: Ga0315331_10731335
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 696
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED287 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025765	Metagenome / Metatranscriptome	200	Y
F054164	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315331_107313351	F025765	GGAGG	MRYQVFSDMDGVLVNFEGGVLEYMNKRFQELKDQPDHPDYKLARSAAKEIGGWDVEINKWHIARSDQEKSLARNYRIRDFMYRMVEDDVDLWANLGWERGGKELWDYIKDIPGLEILSAPMAEGSKIGKRMWVERELGVP
Ga0315331_107313352	F054164	N/A	GTKGPKRKKMVIEAVIEKEKTSFKYEMARGGRNFKKGTDDKADAVVIARAGEFILKNQNNKGFLTEKIILTE