Scaffold Ga0315331_10067922

Overview

Basic Information

• Taxon OID: 3300031774
• Scaffold ID: Ga0315331_10067922
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2645
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038639	Metagenome	165	Y
F080023	Metagenome / Metatranscriptome	115	Y
F082546	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315331_100679224	F080023	AGGAG	MSKIFTIQIAPVRAPYMREKQRVENTVCKKYVRGKVVYHEFRWNSPKAGRNVMYFDTPDTEAEKEPYAEKFAQRVQRAFDKAVIRFHTHYKGFRQDDEIIRVYAPYPDLAPNALITVYSAKVHEYRAHKALLRDIVSKMNNQYRGLMGLLQRGQWDLSKDSLYLLNKYMFDLQSMCRPDHHEVVFKGDKNPLLANRR
Ga0315331_100679225	F082546	GAGG	MKIESKAIVSRRIRNLRADIKSVRNSGNTVRMIILYRQLTASLIKLENMKN
Ga0315331_100679227	F038639	N/A	LSQSTIDLLSYMSKLVDQGFTPEETVEYMTDCEPEWRCSKGYPASRGGLRQAKQRLDRRIEMMKQVNNGVTVFINNKPKQ