Scaffold Ga0315332_10016386

Overview

Basic Information

• Taxon OID: 3300031773
• Scaffold ID: Ga0315332_10016386
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4489
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011190	Metagenome / Metatranscriptome	294	Y
F068714	Metagenome	124	N
F070560	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315332_100163861	F068714	N/A	MKILETNKSHIIYKEDNGIVSIVPNTPYFNLKVLENKNERIRFESPIEGIEVLETFNGMIFNISLNGKTITTRPNMADEVVQSFNDTNKLYDIFDRYNNQRYNMKLLEGILSKYKDRIKPDKKGFIIDDLFIVDRTGVCWIWDKEKKQINRNHRTNLGSGAVCIVVDKTQKLKLNSKDGLIEIDEMGYIILSKIEFLLNPNLQDNVFIDQLPKKHVDILTRSK
Ga0315332_100163863	F070560	N/A	MLMTNQTQQFKQLVSSAKPEAQIPKAESMVAVSSLMTAADHAQFNKGLSSIFVDVPHHLSGESQIFSVRPQQMVPRSAVIQRDESSQLVGISAVSGG
Ga0315332_100163867	F011190	N/A	MCEIIMNFFRNLKKSFDGKDRLRHINQCMTCGKPSFFDSCLICETDDAYRGWNKENGHSR