Basic Information | |
---|---|
Taxon OID | 3300031773 Open in IMG/M |
Scaffold ID | Ga0315332_10000309 Open in IMG/M |
Source Dataset Name | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 20907 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (58.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 36.7468 | Long. (o) | -122.0193 | Alt. (m) | Depth (m) | 100 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F006550 | Metagenome / Metatranscriptome | 370 | N |
F017420 | Metagenome / Metatranscriptome | 241 | Y |
F056157 | Metagenome / Metatranscriptome | 138 | N |
F106115 | Metagenome / Metatranscriptome | 100 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0315332_1000030910 | F106115 | N/A | MAVATAASIQAHLIGATYPEGTLDANNIFDYAQYTTRRRYPSCEVITTQPESTVETKRSTDTTVGFEINYYDKNLGLRTDDVSTQREVENVIRARMETMVLQDYKVVFESKSWSRQSVQRDGGHPAYLISTLKITVKQVNITEMPVDGVLKFIKVGSTVDNAPSADYTYTNVFDVDLQSGYRDIEEGYTGSNIPRHFAGHIQGRFICNIMVKNADLGSTGDKLNKMPLLLTTGEKPQIKFIYTNKTADEVAITNTFTAEPESVQMLYKTTDAVVFRLIAKLISDNIIT |
Ga0315332_1000030911 | F056157 | N/A | MAKKKLASNDYWAQHIIRAQQGGKDYIFALVRRKYSDDDIEPVGPGEYLGLDQKKSYPKITDNDPDSETFGKRIDNPNAEPTGVKIIYKDEFTPENIKKYKTMVGINDFGETAYLYKFKQITIQADKVNEFWSTTQDDAYNKYILKEQVITIEENKSDTRRRVSKKTG |
Ga0315332_1000030913 | F006550 | N/A | MTKIFNTKKADYNGMQLWLNPVDKTVYATEGAPTHSFAEAGGYAIYDFNKHFTNQKLAKDDFGNGAYSHDAFVDSEFKSLAEDYVSDVKAGGRQRQAALRSNTNAAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLGQLKELTYTRSNFEANKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVISLADASLTAKAAAGAWDTFVAATDRSTANPLLDLGVAQLLIEGSGVGGRMSRVGMHPIDFAKYMGNTFIRGVASTKPSEVSFEPGTRELPGFPGAGLVLDNAIRQGDVYCVDTEKEPTIANFQGPQRIGSAHDEETGDDKYFIIDYHLAAIIQSETGRQLTGCSTPTNWT |
Ga0315332_1000030921 | F017420 | GGAG | MNENKIKKVSVKFPNFVSKDSVEYEGKRIVLKLPQIQDINNRMYSELFSGASGMSVGPKQLPHIEGFNCTWRNDEKNPQFTIAQFTMASGEERKVMKIIEKYGGQIIKSRADLNQWQFDETNLSGNTYQVENVNETIGGLR |
⦗Top⦘ |