NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315332_10000309

Scaffold Ga0315332_10000309


Overview

Basic Information
Taxon OID3300031773 Open in IMG/M
Scaffold IDGa0315332_10000309 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20907
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (58.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006550Metagenome / Metatranscriptome370N
F017420Metagenome / Metatranscriptome241Y
F056157Metagenome / Metatranscriptome138N
F106115Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0315332_1000030910F106115N/AMAVATAASIQAHLIGATYPEGTLDANNIFDYAQYTTRRRYPSCEVITTQPESTVETKRSTDTTVGFEINYYDKNLGLRTDDVSTQREVENVIRARMETMVLQDYKVVFESKSWSRQSVQRDGGHPAYLISTLKITVKQVNITEMPVDGVLKFIKVGSTVDNAPSADYTYTNVFDVDLQSGYRDIEEGYTGSNIPRHFAGHIQGRFICNIMVKNADLGSTGDKLNKMPLLLTTGEKPQIKFIYTNKTADEVAITNTFTAEPESVQMLYKTTDAVVFRLIAKLISDNIIT
Ga0315332_1000030911F056157N/AMAKKKLASNDYWAQHIIRAQQGGKDYIFALVRRKYSDDDIEPVGPGEYLGLDQKKSYPKITDNDPDSETFGKRIDNPNAEPTGVKIIYKDEFTPENIKKYKTMVGINDFGETAYLYKFKQITIQADKVNEFWSTTQDDAYNKYILKEQVITIEENKSDTRRRVSKKTG
Ga0315332_1000030913F006550N/AMTKIFNTKKADYNGMQLWLNPVDKTVYATEGAPTHSFAEAGGYAIYDFNKHFTNQKLAKDDFGNGAYSHDAFVDSEFKSLAEDYVSDVKAGGRQRQAALRSNTNAAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLGQLKELTYTRSNFEANKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVISLADASLTAKAAAGAWDTFVAATDRSTANPLLDLGVAQLLIEGSGVGGRMSRVGMHPIDFAKYMGNTFIRGVASTKPSEVSFEPGTRELPGFPGAGLVLDNAIRQGDVYCVDTEKEPTIANFQGPQRIGSAHDEETGDDKYFIIDYHLAAIIQSETGRQLTGCSTPTNWT
Ga0315332_1000030921F017420GGAGMNENKIKKVSVKFPNFVSKDSVEYEGKRIVLKLPQIQDINNRMYSELFSGASGMSVGPKQLPHIEGFNCTWRNDEKNPQFTIAQFTMASGEERKVMKIIEKYGGQIIKSRADLNQWQFDETNLSGNTYQVENVNETIGGLR

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