Scaffold Ga0315332

Basic Information
Taxon OID	3300031773 Open in IMG/M
Scaffold ID	Ga0315332_10000309 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031773 Open in IMG/M

Scaffold ID

Ga0315332_10000309 Open in IMG/M

Source Dataset Name

Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20907
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (58.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

20907

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (58.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.7468	Long. (^o)	-122.0193	Alt. (m)	Depth (m)	100
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

36.7468

Long. (^o)

-122.0193

Alt. (m)

Depth (m)

100

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006550	Metagenome / Metatranscriptome	370	N
F017420	Metagenome / Metatranscriptome	241	Y
F056157	Metagenome / Metatranscriptome	138	N
F106115	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315332_1000030910	F106115	N/A	MAVATAASIQAHLIGATYPEGTLDANNIFDYAQYTTRRRYPSCEVITTQPESTVETKRSTDTTVGFEINYYDKNLGLRTDDVSTQREVENVIRARMETMVLQDYKVVFESKSWSRQSVQRDGGHPAYLISTLKITVKQVNITEMPVDGVLKFIKVGSTVDNAPSADYTYTNVFDVDLQSGYRDIEEGYTGSNIPRHFAGHIQGRFICNIMVKNADLGSTGDKLNKMPLLLTTGEKPQIKFIYTNKTADEVAITNTFTAEPESVQMLYKTTDAVVFRLIAKLISDNIIT
Ga0315332_1000030911	F056157	N/A	MAKKKLASNDYWAQHIIRAQQGGKDYIFALVRRKYSDDDIEPVGPGEYLGLDQKKSYPKITDNDPDSETFGKRIDNPNAEPTGVKIIYKDEFTPENIKKYKTMVGINDFGETAYLYKFKQITIQADKVNEFWSTTQDDAYNKYILKEQVITIEENKSDTRRRVSKKTG
Ga0315332_1000030913	F006550	N/A	MTKIFNTKKADYNGMQLWLNPVDKTVYATEGAPTHSFAEAGGYAIYDFNKHFTNQKLAKDDFGNGAYSHDAFVDSEFKSLAEDYVSDVKAGGRQRQAALRSNTNAAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLGQLKELTYTRSNFEANKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVISLADASLTAKAAAGAWDTFVAATDRSTANPLLDLGVAQLLIEGSGVGGRMSRVGMHPIDFAKYMGNTFIRGVASTKPSEVSFEPGTRELPGFPGAGLVLDNAIRQGDVYCVDTEKEPTIANFQGPQRIGSAHDEETGDDKYFIIDYHLAAIIQSETGRQLTGCSTPTNWT
Ga0315332_1000030921	F017420	GGAG	MNENKIKKVSVKFPNFVSKDSVEYEGKRIVLKLPQIQDINNRMYSELFSGASGMSVGPKQLPHIEGFNCTWRNDEKNPQFTIAQFTMASGEERKVMKIIEKYGGQIIKSRADLNQWQFDETNLSGNTYQVENVNETIGGLR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315332_10000309

Overview

Ecosystem & Geography

Associated Families

Sequences