Scaffold Ga0308401_1005345

Overview

Basic Information

• Taxon OID: 3300031767
• Scaffold ID: Ga0308401_1005345
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3305
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032563	Metagenome / Metatranscriptome	179	Y
F044841	Metagenome / Metatranscriptome	153	N
F070747	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308401_10053452	F070747	GGTGG	MSIKKTEQKSDVRKLNQLSARITLLDQKRQEALEQLVNQFCDLYSIAKSRRVDVMETEERYRGAICAVLFAVDELSKREIAVKRIYWDKYGGLLISLSDPKLNEVKIDEEIKKLAKQRKKQDCGWFIV
Ga0308401_10053453	F032563	GAG	MTNKQIAKLAAAYKKWAEIIVEAWEQDIQGYTNTPFIFQIEMRHLGCILATREVKRELDQMGIAIHEIYVGAKSQVILIEILAGKKKAERINRELKQKIPVGGWLVVEYEHQENGTEERRSQIESA
Ga0308401_10053457	F044841	N/A	MDIPQLKRFIENSDRNVIASMSAVCNVMLLKKGEKYITTIMANWVTLGMNQKIDRKTIKKNAKDKHTDFMLHYQMFAASNQLFVHRVRKSITRIYRAKMIDIDPVESLMHSSELHAFYLLLLLAGKLYFMSRSQ