Scaffold Ga0315322_10253735

Overview

Basic Information

• Taxon OID: 3300031766
• Scaffold ID: Ga0315322_10253735
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1216
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037175	Metagenome / Metatranscriptome	168	Y
F090244	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315322_102537351	F037175	N/A	MIKYHTKNINKQFVSQTVIHTLANVGIKDLSGWLNKWDIHVWDLKDTNPQFFEHVQTTSGQKINPNMPSGVTGKYRMDLWLHDSNNDFKARENSDRIMHETCHAVLISTPYFVSGVHDNVDNRFKANFWYWNKFRWSKFTLSIIDIRP
Ga0315322_102537353	F090244	N/A	MDVESRIFEKLDKIEDRINDLCIRLSAMETEYTAHIESMQRKQDRKLRSRDYTLAIMAVGLTIIEVCRTLGII