Scaffold Ga0326513_10805227

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326513_10805227

Scaffold Ga0326513_10805227

Overview

Basic Information
Taxon OID	3300031760 Open in IMG/M
Scaffold ID	Ga0326513_10805227 Open in IMG/M
Source Dataset Name	Bovine rumen microbial communities from UC Davis, California, United States - 2_2465_0518
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	840
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	38.5357	Long. (^o)	-121.7593	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043727	Metagenome	155	Y
F102209	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326513_108052272	F043727	AGGA	MTNKETIDRWAELIIPAVFKAEETLQKAKPEWKVRLAALSNGTSTEDPHKVAVEYCMEIATIIVTQGKDYVPDGTIDGE
Ga0326513_108052273	F102209	GAG	MKIPKIKENESLAAWRERLAQEFNLDYKMQELIREVSMTSYIRGTNVIIDTLKKDGRI

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