NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326513_10023030

Scaffold Ga0326513_10023030


Overview

Basic Information
Taxon OID3300031760 Open in IMG/M
Scaffold IDGa0326513_10023030 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from UC Davis, California, United States - 2_2465_0518
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4604
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5357Long. (o)-121.7593Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039427Metagenome / Metatranscriptome163Y
F093002Metagenome106Y
F102209Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0326513_100230301F039427N/AMTKKMFALVSGVIGGLQTIGVAVVTYTQPEYATAINSAIVIAGAAAIEICNLFVKSE
Ga0326513_100230303F093002GGAMTEKEFDQQVWRRYDTVTIDTGIETTIMDVCFSTRSVRIYLKCSPPEWMTCKRIVGHATRFGGEADDMAIIEELHNRVIKQADDIERLKNEKKELEEKLSKNHLKELLTAVNVLQQGMVVKKSKMEQVEKGLESLMRVLEDMDNKK
Ga0326513_100230308F102209AGGAMKIPNIKKDESLAAWRERLAQEFNLDDRMQEIIREVSVTSYIHGTNTTLEILKQEGRI
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Institute for Fundamental Biomedical Research
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