NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0316219_1197404

Scaffold Ga0316219_1197404


Overview

Basic Information
Taxon OID3300031759 Open in IMG/M
Scaffold IDGa0316219_1197404 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)724
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010534Metagenome / Metatranscriptome302N
F042163Metagenome / Metatranscriptome158N

Sequences

Protein IDFamilyRBSSequence
Ga0316219_11974041F042163N/AMNLTVKITEQVEKKLEAVLKGKYDNRTIWMYYKVSLQMLRDILEDLIACHHTTHSLAEKDLYYEQNKVQIVDWIQWIQNRTSSDKLVDLDRLLSKLIKDKAEN
Ga0316219_11974042F010534N/AGEKQEAIMNLIDQQIKGALKDQASRLEILQDRIKDAIDIGTTEHSQGIKQVMLFVTKAHVQAWIASLKHKVDTAGDDCEICDLEKILGEESLEIAEAVKVALNNRNEEARKRVLGELLEEITTKIEALSVRVPQAPQP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.