NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316219_1083621

Scaffold Ga0316219_1083621


Overview

Basic Information
Taxon OID3300031759 Open in IMG/M
Scaffold IDGa0316219_1083621 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1244
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014823Metagenome / Metatranscriptome259N
F021930Metagenome / Metatranscriptome216N

Sequences

Protein IDFamilyRBSSequence
Ga0316219_10836212F014823N/AMSKKSNKSKEGTPILIDYSLYRDMQEDVREGSQAADELTSVVAQIIYKEIKRRKEFRSLLASVEQTLSTSMRRVHRKVIELRKENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVYKQSRSEKEIENLQAIAIAEEKVDLPESLEIL
Ga0316219_10836213F021930N/AMSDQDLRKVTELLREVESEEREKVMEAAEQNLLDSLKSVENITKAIDQLVIKETKRRHDFKDLLTTIKSIVVKSKKETIDGIVEIEKSGNRPSFLVIAEKLAVQLSEIEYIISRQSLEQMEKLMKIVTSEDYEEAREKIDLRLTK
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