Scaffold Ga0316219_1001743

Overview

Basic Information

• Taxon OID: 3300031759
• Scaffold ID: Ga0316219_1001743
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22167
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.0411
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036080	Metagenome / Metatranscriptome	170	Y
F058556	Metagenome	135	Y
F083483	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316219_100174320	F036080	N/A	MNTRIDLESAIMTAWQTADDIELLFKHYGDHPTPMTEDDVLNALLGIKALHEMRMEKLMDTYCQKFELNQYCVDPEKLAARERLMYPDFPIKQKGKKK
Ga0316219_100174323	F058556	AGGA	MTTFIVEHLHNGHAMFDTVQGVEDIDPTMFKNIQTLWVCDTPEEIEAVENELRRKHARSGQSS
Ga0316219_100174326	F083483	GGA	MKKKYDYYKLDVGFYPDVIKLCFDDKVFQQILKDHNVSLKANALDYGIAETHVIGDGKDAIIVLVFDMSLVNDDISELVDTIAHELCHAVDSLAEHIGEDDGFVGETRAYLTGHLAKQVFKICMHEKEKYARKTSRAKTKQTSQTKRGNEPQIHIEYLGRSGSHSLTELQSIIRGAEDDERQDQQAPRDSV